Now open for application
Closed for application
C38.CU5.03

Genomic tools for DNA-informed breeding for fruit crops resilience

  • Reference person
    Luca
    Bianco
    luca.bianco@fmach.it
  • Host University/Institute
    Edmund Mach Foundation
  • Internship
    Y
  • Research Keywords
    DNA-informed breeding
    Haplotype-resolved genomic sequence
    Breeding information management tools
  • Reference ERCs
    LS2_11
    LS2_5
    LS9_8
  • Reference SDGs
    GOAL 2: Zero Hunger
    GOAL 3: Good Health and Well-being
    GOAL 13: Climate Action
  • Co-Supervisor

Description

Suggested skills:

Good knowledge and experience in Computational Biology topics both as a user of bioinformatics tools (to analyze genetic data) and as a developer of software/scripts to accomplish data analysis. Preferred programming languages include Python, R and C. Prior experience with the analysis of genotypic data from plants is required.

Research team and environment

The Research and Innovation Centre (CRI) of the Fondazione Edmund Mach pursues scientific research, develops biotechnologies, and promotes innovation for agriculture, bioeconomy, ecology, biodiversity, the environment and food. The Centre focuses on basic and applied research on: (i) strategic supply chains of the Trentino agrosystem; (ii) forest and alpine ecology; (iii) biodiversity evolution and conservation; (iv) effects of climate change on natural and agro ecosystems; (v) bioeconomy, (vi) agrobiotecnology. The multidisciplinary functionality of the Center is guaranteed by the matrix organization and the transversal integration of the 21 Units and 21 Technological facilities on 4 thematic areas, namely Agrosystems and Bioeconomy, Biodiversity, Ecology and Environment, Food and Nutrition and Computational Biology. The technological platforms are operated by highly qualified personnel and cover Plant Phenotyping, Sequencing and Genotyping and Metabolomics. The Centre is equipped with a High-Performance Computing Facility with 376 cores and over 7.5TB of RAM (up to 2TB per node) and over 100TB of dedicated storage. The Centre hosts three major germoplasm banks, namely:Grapevine germplasm collection that includes species of the genus Vitis, cultivars of V. Vinifera subsp. Sativa, V.V. Subsp. Sylvestris and interspecific hybrids;Apple germplasm collection that includes species of the Malus genus, cultivar of M. X domestica, M. Sylvestris, M. Sieversii, M. Orientalis and interspecific hybrids;Berries germplasm collection that comprises species of the Vaccinium genus, such as V. Corymbosum, V. Angustifolium, V. Virgatum, V. Myrtillus, V. Vitis ideae, V. Macrocarpon and hybrids, Rubus, Fragaria x ananassa, Ribes and other minor crops.